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Fall 2003

Spring 2003

Fall 2002

U.C. Berkeley Library Web

Newsletter from the Physics-Astronomy Library, University of California, Berkeley

Spring 2004

Scholarly Communication

The development of science is inextricably tied to the possibility that researchers continue to readily share discoveries. This is the basis on which the scientific community has founded its model of communication. Physicists and astronomers and most scientists communicate their work by journal articles. The medium of the scientific journal as a means of communicating science has worked well for a long time, centuries. The science journal dates back to the 17th century. In London Philosophical Transactions of the Royal Society and in Paris Le Journal des savants appeared in the year 1665. The growth of journals was rapid, remarkable. One count reports 10,000 by 1900 and 133,000 by 1991 (all subjects). However, today there are both obstacles and opportunities in the scientific communication cycle. The obstacles are mostly economic with the high journal costs, and the opportunities are mostly technical with the Internet. “Open access” journals and “open archives” exist, and new offerings were launched in 2003. The Public Library of Science became a publisher. It made a grand entrance with the launch of PLoS Biology. With a combination of exemplary research and great PR, the launch of PLoS was an event to which scientific organizations had to take note. In similar or related approaches, universities are starting “institutional archives”. Scientists themselves have promoted an increasing number of initiatives, largely with the view of confirming or reconfirming the principles of open access. The reader should have access to the scientific article.

Science in its December 19, 2003 issue lists “open access” as one of the areas to watch in 2004. The December 18 issue of Nature briefs readers on 5 major science stories from 2003, including the rise of open access.
  “Will the scientific literature in future be dominated by journals that do not charge their readers? That is the goal of the ‘open-access’ movement, which argues that the costs of publishing should be borne up front by those who fund research, rather than those who want to read about it. Open-access journals which charge publication fees, have been proliferating over the past few years. October saw the launch of the most prominent, Public Library of Science Biology, which is competing for top biology papers with Nature, Science and Cell.”  
On December 10, 2003, the UK House of Commons Science and Technology Committee launched an inquiry into the price and accessibility of scientific journals, including the question of whether the government should support open-access journals.

Lund University Libraries (Sweden) maintains a Directory of Open-Access Journals. http://www.doaj.org/ Titles for physics and astronomy include: New Journal of Physics (Institute of Physics, UK and Deutsche Physikalische Gesellschaft), Optics Express (Optical Society of America), Materials Physics and Mechanics (Advanced Study Institute, St. Petersburg, Russia), MPEJ/Mathematical Physics Electronic Journal, Apeiron: Studies in Infinite Nature, Information Bulletin on Variable Stars, Physics-Uspekhi Online, Pramana: Journal of Physics.

Another early alternative physics journal (1997) begun by physicists is JHEP/Journal of High Energy Physics. JHEP is one of the most successful electronic journals, begun by SISSA (Italy) and now marketed cooperatively by IOP (UK). Each article submitted/uploaded to JHEP is managed by a robot, which through a keyword-based check, assigns it to an “editor”, a scientist in the field. Editors select one or more referees. Theoretical physicist and staff director of JHEP, Loriano Bonora reports that “JHEP is 10 to 15 times less expensive than its traditional competitors.” JHEP is not in the Lund University list of open-access journals, as it is not free to all readers. JHEP requires richer countries to pay a “modest” fee as subscribers and offers the journal free to developing countries. SISSA and IOP introduced a new electronic journal in 2003 based on the same model – JCAP/Journal of Cosmology and Astroparticle Physics. Both JCAP and JHEP are linkable from the Physics-Astronomy Library’s e-journals page. http://library.berkeley.edu/PHYS/ejournal.html For more information, see article by Bonora, translated in the Focus section of the December 2003 issue of Jekyll.comm :International Journal on Science Communication. http://jekyll.sissa.it/jekyll_comm/home_eng.htm

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Electronic Information News

American Physical Society announced in December a new free TOC/ table of contents notification service for each APS journal: Physical Review, Physical Review Letters, Reviews of Modern Physics. The service provides users (subscribers or non-subscribers) with e-mail alerts of recently published issues. Signing-up is easy at the Email Alerts Center http://ojps.aip.org/jhtml/APS/alert.jsp or at the APS Journal homepage http://publish.aps.org/. Readers may also sign-up from the individual journal homepages. Enter your name and e-mail address, and select your choice of alert format (HTML or ASCII). This useful research tool will help keep you up-to-date with the latest physics discoveries.
 

ScitationAmerican Institute of Physics has revamped and changed the name of its OJPS/ Online Journal Publishing System. The platform re-launch takes place this month (January 2004). Under its new snazzy name, Scitation will display over 2 million tables of contents/abstracts and deliver 1 million full-text documents monthly. Watch for Scitation Alerts later this spring (April 2004). AIP and IEE (the Institution of Electrical Engineers, UK) will partner to provide alerts powered by the INSPEC system. Physicists may subscribe to weekly alerts from 100 physics-related subject areas, or set-up custom alerts based on their own search criteria. For additional information see http://scitation.aip.org.
 

ADS/Astrophysics Data System announced two new services in January, first the completion of a new full-text search system. The service allows users to search the OCRd/Optical Character Recognition text of all the scanned pages in ADS, some 2.5 million pages. The second new service of ADS is “myADS”, a personal notification service that allows a searcher to store several queries and receive the results weekly from the latest database updates. Both services may be linked from the main ADS query page. ADS is accessible from our Article Indexes page (linkable from our Physics – Astronomy Library homepage).

Guenther Eichhorn, ADS Project Scientist, reported happily on a test of the new search system. A recent Physics Today article posed the question of the earliest use of the phrase “critical mass” and reported that a 1939 article might be the first. A full-text search of ADS produced an earlier 1919 quote from Arthur Eddington.
 


AIP has added additional years of full-text backfiles for 6 of its journals: Applied Physics Letters, 12 (1968), Journal of Chemical Physics, 48 (1968), Physics of Fluids, 11 (1968), Journal of Mathematical Physics, 9 (1968), Review of Scientific Instruments, 39 (1968), and Journal of Applied Physics, 39 (1968). One way to link to electronic journals is from the library’s e-journals list. http://library.berkeley.edu/PHYS/ejournal.html Another way among several is incidental to an INSPEC database search, through CDL/California Digital Library arrangements with vendors and publishers and facilitated by technical agreements and standards (particularly SFX).
 

The arXiv (Cornell; formerly LANL) has a new e-print (preprint) archive in Quantitative Biology http://arxiv.org/archive/q-bio established this fall 2003. http://arxiv.org/new/q-bio_announce.html Subject groupings include:

# BM - Biomolecules
# CB - Cell Behavior
# GN - Genomics
# MN - Molecular Networks
# NC - Neurons and Cognition
# OT - Other
# PE - Populations and Evolution
# QM - Quantitative Methods
# SC - Subcellular Processes
# TO - Tissues and Organs


CDL/ California Digital Library has received a year-end offer for one-time purchase of perpetual rights for the 1987-1996 electronic backfiles of Nature, which is under consideration.
 

IEEE/Institute of Electrical and Electronic Engineers will soon join the Virtual Journals in Science and Technology, sponsored by AIP and APS. Articles and abstracts from the IEEE’s journals will appear in the VJs early this year. Virtual Journals are online-only publications that collect relevant papers from a broad range of science journals. The series currently includes five titles in nanoscale science, biological physics, quantum information, superconductivity, and ultrafast science. With IEEE, the VJs will include the most significant articles from the latest issues of more than 170 participant source journals, including Science and Nature. Spokesperson for IEEE stated in a December 1, 2003 AIP press release, “The Virtual Journals have become an essential cross-publisher research tool, and we are delighted that our inclusion can contribute to the advancement of science.” http://www.virtualjournals.org
 

The American Astronomical Society announced plans for implementing data linking in 2004 for its journals, starting with ApJ/Astrophysical Journal or its Supplement. Just as reference linking allows for moving back and forth from references to the referenced articles, data linking will provide connection to the original data on which an article is based. Plans are to provide “object” information with hyperlinks to Simbad, NED, etc. These will appear later in the paper publication, since entry into Simbad, etc. is done manually at the data centers. The Simbad astronomical database provides basic data, cross-identifications and bibliography for astronomical objects outside the solar system. http://simbad.u-strasbg.fr/Simbad NED is the NASA/IPAC Extragalactic Database operated by the Jet Propulsion Laboratory, Caltech. http://nedwww.ipac.caltech.edu/ There will additionally be hyperlinks to the data set on which the article is based. Since different data centers use different identifiers and observatories do not have a standard way of identifying a data set, the implementation will be slow. Details will be worked out, but functionality is expected to appear in 2004.

The University of Chicago Press publishes the AAS journals. The size of AAS journals continues to increase, both in number of articles and in length of articles. The delay time between submission and publication has dropped some 35%, since 1998-1999. Refereeing still consumes the longest time period. Page charges should drop again in 2004. Institutional subscription rates will rise by about 5%. Overall there has been a 4.7% drop in institutional subscriptions, one reason for the rate increase. The ApJ editorial office did sample studies and found that 72% of the papers published in July-December 2002 had also appeared on astro-ph, the arXiv e-print site.
 

The 2003-2004 84th edition of the CRC Handbook of Chemistry and Physics is searchable online. http://www.hbcpnetbase.com/ The Critical Constants table has been updated and expanded and reflects new or more accurate measurements of critical temperature, pressure, molar volume. It reports the normal boiling point of over 850 fluids. The new edition offers improved table manipulation, better speed and a lockable left-hand column for easier viewing. The number of interactive tables has increased to 63. Once the data is displayed, other options are facilitated (sort, display structure, export table to Excel). Substance searching has 5 pre-selected search fields: name with left/right truncation, MF in Hill system order, Chemical Abstracts Service Registry Number, common formula (e.g., NaCl), and/or MW (value or range). Each value has a pull-down menu and a “hints” file. The Hill system is carbon first, hydrogen 2d, all else following in alphabetical order. A compound containing 4 carbons, 2 nitrogens, 2 hydrogens, and 2 sulfurs would be written c4h2n2s2. New coverage: Fermi Energy and Related Properties of Metals, Interstellar Molecules, Ionization Potentials of Atoms and Neutron Cross Sections, and Directory of Physical and Chemical Data Sources.

Seekers using older editions of the handbook may appreciate a Web site maintained at Indiana University that lists tables relocated or removed from the 71st to 79th editions, currently cross-updated to the 83rd ed. http://www.indiana.edu/~cheminfo/crc_xtabs_71-79.html

 
Campus Events

The J. Robert Oppenheimer Lecture in Physics
“Quark Confinement and String Theory”
Edward Witten, School of Natural Sciences, Institute for Advanced Studies
January 26, 5:45 pm, 2050 Valley Life Science Building.
Admission is free. Contact: Department of Physics (510) 643-8411 or Virginia Rapp (vrapp@physics.berkeley.edu)

J. Robert Oppenheimer Centennial at Berkeley
Conference: Oppenheimer as Scientific Intellectual
Friday April 23 – Saturday April 24, 2004
The Faculty Club
Open to the public. Contact: History of Science and Technology –Office / OHST
http://ohst.berkeley.edu/oppenheimer

Lecture
Daniel J. Kevles
“Scientists, Weapons, and the State: the Twentieth Century”
Thursday April 22, 6:00 pm
Morrison Room, Doe Library
Open to the public. Contact: History of Science and Technology –Office / OHST
Kevles is the author of the book, The Physicists: the History of a Scientific Community in Modern America, 1971, new preface in 1995.

Exhibit
Bancroft Library, Bancroft Exhibition Gallery
“Breaking Through: a Century of Physics at Berkeley, 1868-1968”
Opening April 22, 2004
Contact: David Farrell (dfarrell@library.berkeley.edu)

Exhibit
Doe Library, Bernice Layne Brown Gallery
“’Looking Where the Light Is’: Physics in the 20th Century”
April 22 – June 2004
Contact: Diane Fortner (dfortner@library.berkeley.edu)

Library and Related News

On December 22, 2003, Laura Ng announced her retirement effective January 20, 2004. Laura has been an employee of the University of California, Berkeley for almost 22 years. Laura began in the office of campus development, but for most of the years she has served the university in The Library in various positions including Education - Psychology Library (Tolman Hall) and Government Publications (Doe Library). But we will remember her most for her many productive years of service as Operations Manger for Physics – Astronomy Library. I hope all of you had an opportunity to thank Laura and wish her well in her future endeavors.
 

I invite you to please welcome Kim Wu (kwu@library.berkeley.edu) as the library’s new Operations Manager. Kim has been acting as the technical services workleader, our PC expert, and Web guru. Kim attended Berkeley as an undergraduate and was granted a degree in Molecular and Cell Biology. During those years Kim worked part-time in the Physics Library as a student employee (1994-1998). We have been highly fortunate to have her continue as Library Assistant since December 1998. Kim has consistently provided excellent public service to the students, faculty and visitors in physics and astronomy. Faculty and graduate instructors will be familiar with her responsive and accurate work in Reserves processing. In the past two years Kim has been taking courses in computer graphic design working toward a “Graphic and Interactive Design” certificate program through UC Extension. Kim’s products in this area, including the redesigned Physics – Astronomy Library’s Web homepage, evidence her interest and showcase her talent and skills.
 

A constrained budget plus inflation in the cost of library materials (averaging about 8% for serials/journals across all disciplines) means we face another cancellation project this spring. Faculty were sent a letter late in fall semester regarding journal prices and scholarly communication from outgoing Chancellor Berdahl and the Academic Senate Committee. http://library.berkeley.edu/Collections/ If you have questions or comments about the issues raised in the letter, please feel free to contact us (phys@library.berkeley.edu or astr@library.berkeley.edu). You will find more information at 2 Websites:
UC-wide: http://libraries.universityofcalifornia.edu/scholarly/
UCB: http://library.berkeley.edu/Collections/

 

Physics-Astronomy Library
40 Doe Library, (510) 642-3122 
http://library.berkeley.edu/PHYS/
phys@library.berkeley.edu

Send comments or questions regarding this newsletter to:
Diane Fortner, Physics Librarian (dfortner@library.berkeley.edu)

Physics-Astronomy Library staff include:
Kim Wu, Library Assistant (kwu@library.berkeley.edu)
& numerous Student Library Employees


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